SRX3322384
GSM2827343: ChIP-seq from IMR-90 (ENCLB928PDD); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
USF2

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sex
female
cell type
IMR-90
lab
Michael Snyder, Stanford
sample_type
primary cell
health state
unknown
age
16 week
donor ID
ENCDO000AAX
dev_stage
embryonic

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32069042
Reads aligned (%)
91.0
Duplicates removed (%)
17.5
Number of peaks
17340 (qval < 1E-05)

hg19

Number of total reads
32069042
Reads aligned (%)
90.3
Duplicates removed (%)
18.8
Number of peaks
17502 (qval < 1E-05)

Base call quality data from DBCLS SRA